Scaffold Ga0255243_1062605

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0255243_1062605

Scaffold Ga0255243_1062605

Overview

Basic Information
Taxon OID	3300024569 Open in IMG/M
Scaffold ID	Ga0255243_1062605 Open in IMG/M
Source Dataset Name	Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8d (Metagenome Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	936
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	46.1812	Long. (^o)	-123.1834	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002708	Metagenome / Metatranscriptome	535	N
F013293	Metagenome / Metatranscriptome	272	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255243_10626051	F002708	N/A	MKKLQKEFTGNFDRVGNTKFIQIKKENGVAIYERQNMDGSTRSYEVFIVKVVPKGTALPGGNTVQETYEQYPGCAAFGKTAYDCKTIDSAENRFDELVKKVKDSADAKEEAAKTGIPVKRGRKAGPKMNVKMPLNKGTKFTIGMLSTYTGINTVYIRKAVNEWLDDGVIS
Ga0255243_10626052	F013293	N/A	MNDMIDTASDLRNLITVDITETMTPDIELTESELEAMDDIRIQDELSATVAELPASTEEQLARYNEKMEFLASIRAEIPALNVVEETTEESYSVPSGRYDYVYTMGTI

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