Scaffold Ga0256306_1012291

Overview

Basic Information

• Taxon OID: 3300024560
• Scaffold ID: Ga0256306_1012291
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepC_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2133
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F043357	Metagenome / Metatranscriptome	156	Y
F048254	Metagenome / Metatranscriptome	148	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256306_10122912	F048254	AGGGGG	MVGDERMVAMLKTLAIGESHRLPARYRVEVTVRNMLALTGYRWTVIEIITPQTNTTRFTVTRDA
Ga0256306_10122913	F043357	GAGG	MSENIFAPFFGAVQDGARERELREYGRDGPHGRWDPGEMPWTIPRRIHPEYRERLSTDAIDWPTVGESGSGSDDRGNDE