Scaffold Ga0255280_1001095

Overview

Basic Information

• Taxon OID: 3300024555
• Scaffold ID: Ga0255280_1001095
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Yuk_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4500
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (16.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022861	Metagenome / Metatranscriptome	212	Y
F028489	Metagenome / Metatranscriptome	191	Y
F042298	Metagenome / Metatranscriptome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255280_100109510	F042298	N/A	MNENDGIPEDMTLADMLKMRDLNIYHWQEYERAKERARLQSNKQENLGETTKDSEREPNRGEEIY
Ga0255280_10010953	F028489	N/A	MIMNMIGKELKVNTTTDYSKFAVLPMNRGIDSKHVQKMIASIRKMGVLRCVITTTTDIIEGEKKRYIIDGQHLATALEREEMPIPFIDITVDSEEDLIEKMAYLNNSSKSWDLMNYINSWKMIRPDYMKLFKWKNMYDIEITMLAAIGVNNAGIRTSTQSIKTGSFKITNPNAEDMCKAFNDIFLKIGMSERSVKFQFLTAFLQAYGNYNHEKVITNLDKHLKTVKLMMNGEETATYIRRKIFNLPK
Ga0255280_10010957	F022861	AGTAG	MKAICIDASNKPNKIPDNEWVKEGEVYTITRVVRMGLQDNKFGVLLKEVKLSAESFPYELYDADRFLPIDLLSQALEETKETVKEADLELI