Scaffold Ga0255242_1028725

Overview

Basic Information

• Taxon OID: 3300024554
• Scaffold ID: Ga0255242_1028725
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1279
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006181	Metagenome / Metatranscriptome	379	Y
F010317	Metagenome / Metatranscriptome	305	Y
F019468	Metagenome / Metatranscriptome	229	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255242_10287251	F006181	N/A	NIVHVIYPDEAVHSFVMETDMVVSDILERVFAEWNHGSGMESELFIRSKKRSLSVNDIVCVNGKYYLCESFGWNEVTPQFVNELEEEVSNHPNRIQGAWFALNDVMWDRKSKNNLELV
Ga0255242_10287252	F019468	N/A	MTIEKTYKLSIKDTAYFLTEEEVTKLYEQCRKALNIDNANPYFPNYPPGVRKFDDDKTTPLNPTTPSIPYPYDTYPWYTPTYPSGPNYPYWTSPNTTTTCGTINAGEGICVKDTNWQPNLCNTVKSSNGINFLSDDMETIKENDKWRSSVQQALDKLSAKTNVTTSDGTTIR
Ga0255242_10287253	F010317	N/A	MKSIYIEKLAEVPGGLPARNMEEHIDGQYQGDSHSIPVEYNLEGVLSYDIEVGKSVVVGRTKRNGVEAYGVFSTSTVTEVGNKYFKTKNSLYLYKFL