Scaffold Ga0255242_1004425

Overview

Basic Information

• Taxon OID: 3300024554
• Scaffold ID: Ga0255242_1004425
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3268
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → unclassified Planctomycetia → Planctomycetia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019635	Metagenome / Metatranscriptome	228	Y
F022865	Metagenome / Metatranscriptome	212	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255242_10044254	F022865	AGG	MKKSKTVTEQKPVMGRPRKHGRDAITCVVKLPPEVVAWIDARYTTRQEGLSAIVVEHWAEGMV
Ga0255242_10044257	F019635	GGAG	MPQIRIYIDGDTEQPTPQAEPTPDLQAEIDRINRTLCDVVRRIAKIESDVRGVRMRLIEDDAEGQVP