Scaffold Ga0255231_1020057

Overview

Basic Information

• Taxon OID: 3300024539
• Scaffold ID: Ga0255231_1020057
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepB_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1038
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049561	Metagenome / Metatranscriptome	146	N
F098924	Metagenome / Metatranscriptome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255231_10200571	F049561	AGGAGG	MTKIRLELEETDLFNAIKKIIDHPNRVEIAKTLTTIIAPNERLSSIFFKTYFGGAAPQVLPEGTMITVKPSVLSYRANVDAMKRIGLLNISGHATAIIKEFRGFHESHNYYVNFMNVDDNDKSYEDTGFISYQDVISIIEEL
Ga0255231_10200573	F098924	N/A	YLIYSLKILIMNVLGKLFNKKKTYPKDNKFEVLIIGEDKSDFQEMLGITDKRREELLKLAFKSYKDNDLFTTSCQVAVAECTHINEVVFLMTILTKIREVESNPLSAILGSIGRGE