Scaffold Ga0256338_1013617

Overview

Basic Information

• Taxon OID: 3300024536
• Scaffold ID: Ga0256338_1013617
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atl_RepC_8h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1768
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (71.43%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001059	Metagenome / Metatranscriptome	790	Y
F041182	Metagenome / Metatranscriptome	160	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0256338_10136171	F041182	N/A	KTAMEVLIEAMQSDELDLKEKAKIAEKLATFESSRAPVISIEHVQNLVKEEDVTADDALDEFLDSLRKV
Ga0256338_10136175	F001059	AGGA	MATYDIEALKADLPTAKELAQFVYDKTQIALDLVGKSKEDQYQVAKNALEGKKVPAEFLTDENPYVDRKELIPVDEIRKLPPRSEDLPPLESQVHFFGATNMPHPLDPQSDRKVGINFKKYFDGTITYQVMGPLEQVAVGSRINKYGQNVPEKYTWMDPRTEELVMRHANGTFTKTGQGLYTYLVGEKGAGIWPLIDRDIVSVTSKNIADPWA