NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255056_10246523

Scaffold Ga0255056_10246523


Overview

Basic Information
Taxon OID3300024521 Open in IMG/M
Scaffold IDGa0255056_10246523 Open in IMG/M
Source Dataset NameSeawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)796
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: Northwest Territories
CoordinatesLat. (o)70.66Long. (o)-123.0Alt. (m)Depth (m)570
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013818Metagenome / Metatranscriptome268Y
F025847Metagenome200Y

Sequences

Protein IDFamilyRBSSequence
Ga0255056_102465232F025847AGGAMDKRINRLFNNFGIAMLFFLLGTFYTYYKIDQRLWNETTQKAWDIEARALNFPQKSCYNWQDIELIIFGEIQE
Ga0255056_102465233F013818N/AMNSVKKYHEMKQDIVDKESLYLCSEIEKALERIISYDDGMLDDKLFTQIKKPAIKLLKEWHL

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