Scaffold Ga0255056_10027353

Overview

Basic Information

• Taxon OID: 3300024521
• Scaffold ID: Ga0255056_10027353
• Source Dataset Name: Seawater microbial communities from Amundsen Gulf, Northwest Territories, Canada - Cases_109_1
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 2110
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Gulf → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: Northwest Territories
• Coordinates
  • Lat. (^o): 70.66
  • Long. (^o): -123.0
  • Depth (m): 570

Associated Families

Family	Category	Number of Sequences	3D Structure?
F011880	Metagenome / Metatranscriptome	286	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255056_100273532	F011880	AGAAGG	MGTAKSTHYTPRFRPFDMLAVPNQPLVILENTNHRIGAESVTGVQDSFHRYVDSDMIYFQFCGNTTVETEFGVYEMEPADVMLVPGGISHRSIGKNESLRYFCQTYEPVDYIMGEDKYTSRTSFEVKRIGGPQWPAAQDTETASKGNVVEKMHYWDDGPNDLTVVERDYDSLVGVAGLGRGKPGSGIKKLRAFDHFTAIVGKGGGDAGTQALMETASMRIRCYNMQDEQFAFHRALRSEEVRIQFRGDALDLSEFENIEVSPGEITIIPLGISHSVITIPPDDPNFLRLNFYSKLHWRVPVDPTRHVFNSRFEVSTTVHKEAEWRKQAAAGR