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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300024520 Open in IMG/M |
| Scaffold ID | Ga0255047_10022949 Open in IMG/M |
| Source Dataset Name | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Restricted |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 3320 |
| Total Scaffold Genes | 10 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (60.00%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: British Columbia | |||||||
| Coordinates | Lat. (o) | 50.0528611 | Long. (o) | -123.8211389 | Alt. (m) | Depth (m) | 425 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000567 | Metagenome / Metatranscriptome | 1020 | Y |
| F009536 | Metagenome / Metatranscriptome | 316 | Y |
| F013896 | Metagenome / Metatranscriptome | 267 | Y |
| F080498 | Metagenome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0255047_100229492 | F009536 | N/A | MMSSKEVMKQAFNLMSGTLKEEIKKNLENPRSYTRLFVKICEEIDGMKVKLPKFTALKNDILKINKQTHSKTTDEIKYSIPESQSTLSVKDIERWLETAKKKDQLIYYTGRTLDHPKSVKEEAVFRKARNLAMEYDNIPFKNKKYQYRGSVKGEWGCNYKDIVTLVQKKVADLQRDTVWDEEKKSYVPGNIISYPIYNYIMIKI |
| Ga0255047_100229493 | F000567 | N/A | MKEKLLKITQKITTWHEGMFKYLTLKSKTSIFFTWLLVFICLYEIFEHIIIPLALIWWGF |
| Ga0255047_100229494 | F013896 | GGTGG | MICDKCNGNGFTLVKGETIQCKKCLSSGEIPETIAPPKYPEEDLANIYQTLYETSLKLSESSDPGMVAASLMAIGSRIYKTILTTEDYDRIMERILKTDVEPYKKETLQ |
| Ga0255047_100229495 | F080498 | N/A | MIKKIIVYHLLLFFVVILFACAPRLHVAPNPVEKDNKFMIQLLRNIITQGMDF |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |