Scaffold Ga0255048_10009131

Overview

Basic Information

• Taxon OID: 3300024518
• Scaffold ID: Ga0255048_10009131
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 5307
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050424	Metagenome	145	N
F073577	Metagenome / Metatranscriptome	120	N
F104032	Metagenome / Metatranscriptome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255048_100091316	F073577	AGGAG	MKVKLFNKEWEVKNPTYKEKRELWKLNAMAFVGKELNQDKYFELLQKVEEISGLRPEDYVNKNGDELAMANIDSLLQQIFLSYMGLSDDSKKA
Ga0255048_100091317	F104032	N/A	MAVSGKVYAKSDFSVAIKNKNATAFETAAANDAAYELLPVINVSAPVLNLVESGEIRSNNAGMVELDIDQFRTTKGGFITMDFEVPAERDLIVRLLGNVLQDHGESGSDPYVHTIQATSGAALARPDFTGSSTTGIPSIFDIGLYYPESAQDKMITSAVLQSLTMNFDMSDGRCLLSGTFYSGFTSSSKFLVEQTLSANSAAPTLSSTSPTQIESYFDVKKLDVDGTSLADMVITAVSFTFENNVARVGRDSNGDAESYAFGIPSVNITGEISLMYDANFDFGSGGNVLQDFLSGNTATLKLQQGDGTVSTAGEMNIECEIYSTAVNLDPNADTGAVITIPFKVVQPTSSGAASGTAFKFEYVDSTQASGW
Ga0255048_100091319	F050424	GAGG	MAIEFENIYKDRVIDTIQKLLKQNLASIPIVFDEHRGQESFLIVPESDTFIDYTSNAHIREFTTSINYQLRKGGDYTKENQVNRLTMIAEIVKRLLFNNRNYESGNITNWYGGQVSSVEYTRDEDDETISNVIITFQCNTNEVIS