NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255048_10004567

Scaffold Ga0255048_10004567


Overview

Basic Information
Taxon OID3300024518 Open in IMG/M
Scaffold IDGa0255048_10004567 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)8009
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006343Metagenome / Metatranscriptome375N
F047026Metagenome150Y
F077195Metagenome / Metatranscriptome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0255048_100045673F047026N/AMAIFLTQNGEPDEYGLVYNDNAYVIKTTNYTPTVRFRVAILPIDYPISPAIGQVRVYPTRSNDGQYLDRAFFDPSRFLQSYVNGQVDIKGANHNGFYVSNQMHKEYYLAIQEEEKDASGVYQSGDLFISKVKSVWNGVRNEIEWLGFDYTDYTINNTPSVVKKFLTDSPRTIRIDTDQSYHLYFIANERFGAYQYNIKAYSGYNGTGSLLADGIVDNNIAVADSWNEIYFRIPVGTYDIGNIDPSLYTDSLFGSTPSTALNGAASYTIHLEDNTNQQTSEAFTFNVNQTCSKYNEVRVHWLNRLGGYDAFNFYMKSIHTTDIKKDTFDQQHHDWTGNAYNYDKQARGTTEYNVALNKKVTVNTDYLSEAESVWMEDLATSPSVYIEQGNELIAVNIDPRRIQRKTSLNDKLMQYTFELNYSIKNRRQRG
Ga0255048_100045675F006343N/AMKIELPNSWEGVTIEQFQALQKILQEKGDEYATNVAIISIMSGVPMDEIETYSLKTYAKCMQTLSFLSEQLVGGVQKVVEFGGLRYDVITDVYKLNGGQYITLMHLMKDPDKVIDQLHEIMAVFLVPKKKTWWGWKKQPYNSDKHKEIAEAMLQAPMTIVQPLSAFFLSSYLKSAKHILESSVRKAEKVKRQAERRLKHLNQNTAG
Ga0255048_100045679F077195N/AFIRKADENVKLMRQRRCKNHVWRKHYLNGGKVCQVCGKAKEEVERNKDVEE
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Institute for Fundamental Biomedical Research
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