Basic Information | |
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Taxon OID | 3300024518 Open in IMG/M |
Scaffold ID | Ga0255048_10001524 Open in IMG/M |
Source Dataset Name | Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Restricted |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).
Scaffold Components | |
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Scaffold Length (bps) | 15875 |
Total Scaffold Genes | 17 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (11.76%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Canada: British Columbia | |||||||
Coordinates | Lat. (o) | 50.0528611 | Long. (o) | -123.8211389 | Alt. (m) | Depth (m) | 425 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F020903 | Metagenome / Metatranscriptome | 221 | N |
F029278 | Metagenome / Metatranscriptome | 189 | N |
Protein ID | Family | RBS | Sequence |
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Ga0255048_100015241 | F029278 | N/A | MEITIPTKWEDVTIGNYINLRPVLNSKLNPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLDTELPNKLKDKRFKIGGQWYEFKVDAKKLLFGEYINSMEILQNAKDDEEAIFNNLHHILTTICRPVRKTLFGWKHIDVNSEILRKTADNFLNNMPMTIAYPIGVFFYTHSQDLTKAIKTCLMEEAEKMTKEAREELDLVNAGDGGTP |
Ga0255048_100015242 | F020903 | N/A | MSQQLDIFGFDESQLEEVKIDNPTTLSQVFNNIAADMVYCLQQSVRKEGLVYKGNLEQSIKMPVKMFGFRMIATLYLADYYDYLNQGVKGIGGVRKSGDRKGQPWEIKAPNSPYQFKKGPSVSHVRQWAKSKGLNEYAVRNSIARTGIRPRYFFDNCMQETFYGQAFDKFKTDIRIVSGERIAKGLKEILKK |
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