Scaffold Ga0255048_10000952

Overview

Basic Information

• Taxon OID: 3300024518
• Scaffold ID: Ga0255048_10000952
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_2
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 21202
• Total Scaffold Genes: 29
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (24.14%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (16.67%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F022895	Metagenome / Metatranscriptome	212	N
F060729	Metagenome	132	Y
F068898	Metagenome / Metatranscriptome	124	N
F076041	Metagenome	118	N
F090102	Metagenome	108	N
F097404	Metagenome / Metatranscriptome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255048_1000095210	F022895	N/A	MAANLSLAAVAGSNCPRTAGVKELYTIPVADIASITLGTDHDITDITFAAAGTGFGKINFKRGECEVTEAMERSNQVEVNFAVSNPTKEQRKELQAIKNSCEQYMVARLYDGDRLLFVGYDEEFGDEAFAAFMSAESTSGRAKADDNLFSFTMMAEQGEFLRVLSGISGATVPATTPAEIVAELIAATSV
Ga0255048_1000095216	F076041	AGGAG	MAIALTTQPTADGLYSAYLPVKFVATETANDPAYLEFELKTSAGASIPNVPKYRALKVNNTYTFDASNYLKSVLDILSGQGYSTTAIEELTDLYGKYEVEVTDPINGVTALTSNEFYAFANIDGLRYSNDQTANDGINRKGMLYGSELFNGSFAPKYQGAYDRCVVFAQSPQISIVTYEADKPNQYTTPKQFAEIDISSWTNRLISVPLNRTFLATNALVPPSSTPLSKYAGFKASHASLGDMYYYVEDRCKVQEFVFINRYGVKENIKFETYDYESVKTSSESYLAGGYTHTGNTNFFNTSATNVKVNQSIVEDYEVRGNFFTSRHKGELQDFVSSPIQAIVINGEIRPINVLDGSFKLVDKSRGIDFNFKYRYAQKKPSFK
Ga0255048_1000095221	F090102	N/A	MNEYRITANGKEKKIVKLPTGRHEVTLEQWNNAYKYVELALEANRLFEEGKLEESQVKVIESMCGTIASLGEGITYEELLNVEFNKINNLFLIQFGWLSEEKPKRNFKIKGKKFSVPKFEQGTCGDFMDVMSLLAMHEDYNDAEKGLLIAAVYMRNGEYYQDLEEINQRIEFLKKYGRMDLFYSCAFFLLSSLRSYKVDTQRHSAVVEEMEKLTSTSVSWATILYSQVSQSLESFHTM
Ga0255048_100009524	F060729	N/A	VKFNDLKKNLQKLNLKDYDGTHLDSGTIVDAQKFVDTHISFLETNSGNITYICYYKRLLQFYKQTKTQNNDELQASINNVSEIRFGK
Ga0255048_100009528	F068898	N/A	MIASKAEIKALAFSNTFDINAVKDNLIQLVEWEQVLSLFGADFYDDVVANPASYTTLIDTYLKPYIAYNVKAYLSKANHIKTGNKGAQTAQGSNEQIANVEFAKREAMNMATKYKRQMITYLDNTKPALWKGESRDNQIINKIIIM
Ga0255048_100009529	F097404	N/A	VQKRIKNHPRKSQQASFQVTNNVIQLPDYTDKQKIVTKQGLRIVSTVDNNLFPQKVSKLAKESSTLKAVINSFAEYVSYGALLTENMQLERKLTKDLNKYYNWFELSKRVAKDRRTYGYGFIEAIRKGSEVFVYHLDASQVRFVEYLGEKPEAVAISKDWNDTRIRPIERTLYPNYDEEGRTIIPIMEYESGMIDYPLPMWSGAFFDAQVESLIGQYNANQFENGVTLSSILMFDFGDTTDANGDAEKGLARQKQKLESQLKGTSQGRSGKSLIVPKSGDVEAPEYITYPMQKEGSFIELQKLVENNIVKACSWFRSLAGLESAGTLGNNQQLRNEWELAERLIRNEQDIIMEALQKAFKGTAYEGEVMFNNQSPMNVVNDLAAITALLEKKDIIGEAAVYELLMMMGMDEEQAKIIVGNDSE