NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0255049_10023461

Scaffold Ga0255049_10023461


Overview

Basic Information
Taxon OID3300024517 Open in IMG/M
Scaffold IDGa0255049_10023461 Open in IMG/M
Source Dataset NameSeawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyRestricted
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).


Scaffold Components
Scaffold Length (bps)2821
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location
Location NameCanada: British Columbia
CoordinatesLat. (o)50.0528611Long. (o)-123.8211389Alt. (m)Depth (m)425
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F039681Metagenome163Y
F044724Metagenome154N
F052647Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0255049_100234612F044724GGGGGMTSWDIATPTSLTTGVAKTEINGAQPITKPTQAQTLIEVVPYMASIAALTAGQTYLTKCIIESNSINLLPKQFIVPPIQGGLGTFASSLTPMIDTIECNTALTQGSTQQFQIYGENYIANTVANKLGVGLHYSTAAPTRKEMFYDSVANETATGTSATQISGENLTINDGAFLESITPVLVNGVVTASESFIGSISVTSNDFENSMPLKVPCQPTSVALGSAVAVGLAKQPVYKNIHMGMKSSCLISNSLTIDEAQTATGAFAVGYGYTKS
Ga0255049_100234613F039681N/AMSGIPNPTQLRIKPVYDTGSFGHDVTFPLVLSQASNLATLTPSTASFYQSTHDSALPIDELARFISESDKCELLHAGNDTDFDKTWLIQPDMTAWSYKIALTFGIGLKVSAYTSGNINAGNVKLTITQIGDGAGDTVIEDLTIAVGSANLTATGEQIILFHADIVRPIKFNNGLPIKVRIQTESSKSGTATYQIGMLPVFPIIPTAVPKQWLESQVELHLHGDLTHAYPIWRSENNDELMDYSGCASGGCP
Ga0255049_100234614F052647AGGTGGMEFIDVLPIIYLTIGLVSTYFIGRLVLSHMTQIKKVKRGIEVQKEKKNLENGIDELLENAPQMYSKVLLELQYLKENGADEKQMASLQRKADLLKMAVDNQEIINLAGKPIIKYLGGFLKGIGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.