Scaffold Ga0255049_10007701

Overview

Basic Information

• Taxon OID: 3300024517
• Scaffold ID: Ga0255049_10007701
• Source Dataset Name: Seawater microbial communities from Jervis Inlet, British Columbia, Canada - JV7_2_3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Restricted
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Note: The use of this dataset is restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of the sequences below requires obtaining a license from the dataset's corresponding author(s).

Scaffold Components

• Scaffold Length (bps): 5067
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (18.18%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Inlet → Unclassified → Seawater → Methane Metabolizing Microbial Communities From Different Methane-Rich Environments From Various Locations

Source Dataset Sampling Location

• Location Name: Canada: British Columbia
• Coordinates
  • Lat. (^o): 50.0528611
  • Long. (^o): -123.8211389
  • Depth (m): 425

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006492	Metagenome / Metatranscriptome	372	Y
F015852	Metagenome / Metatranscriptome	251	Y
F068776	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255049_1000770110	F068776	N/A	MNYYYCQDAEVRAQIDELLQQNATIQSNLGTDSSTEERAEAKRKWMELAKKINEIDPKFYRERIMAQHR
Ga0255049_100077017	F006492	N/A	MDAILEALASYGIAGIFLAVLVYYLNKLTDIHREERKDWQVANDKHVEKFSDVIAENTKALVEMRGELKENRCKM
Ga0255049_100077019	F015852	GAGG	MDWRGQLISVSLAFILGVIVAWQGCNSEPQTITIEKPVPKIEYVDRWKVDTVRFVSKQLVTRYDTIYSEKVVTRLDTLLLIDTVSIVQTWLTEVANYDTTISDIRVKWSNYQNRTENLSIQYKRKEQKFSIGVHGLVGVQTDFMQSTKPIFGVGLHGSIKKTYLSAQYGYNGQHYIGVGVGRNLISR