NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255186_1011204

Scaffold Ga0255186_1011204


Overview

Basic Information
Taxon OID3300024512 Open in IMG/M
Scaffold IDGa0255186_1011204 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1223
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013082Metagenome274Y
F091614Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0255186_10112042F091614AGGAMETKHDIINRLASNLRYLRINTKIEQPMSGKIKYMSQKDLAEMMGIGCEQQVSKFELATNQMSASQVYKVAKIFDVTVDSLFGDLTKSDYKKVIKFDIYA
Ga0255186_10112043F013082AGGAMSSIKTVQQEINRLLLQSKTNHHVTASEGGYYHDLCSVSDKTISLEEFYKDFPYHNPDFNSEYWQKQHQKFQELWKQNTI

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