Scaffold Ga0255187

Basic Information
Taxon OID	3300024510 Open in IMG/M
Scaffold ID	Ga0255187_1000993 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024510 Open in IMG/M

Scaffold ID

Ga0255187_1000993 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepA_8h

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	4128
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (50.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

4128

Total Scaffold Genes

6 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

3 (50.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
All Organisms → Viruses → Predicted Viral	(Source: DeepVirFinder)

Taxonomy

All Organisms → Viruses → Predicted Viral

(Source: DeepVirFinder)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location Name	USA: Louisiana
Coordinates	Lat. (^o)	29.8571	Long. (^o)	-89.9778	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Louisiana

Coordinates

Lat. (^o)

29.8571

Long. (^o)

-89.9778

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F013523	Metagenome	270	Y
F026558	Metagenome	197	Y
F057213	Metagenome / Metatranscriptome	136	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0255187_10009931	F057213	GAG	MTDNNFVGSDNAPEAEQVTNQQVDGKVNAGAIRKSTTSGILNALSQASGQNFESVEAAIGYIARTASQQQVGGSAQPLESEPTTDSRMGRDVGNDSTDLRDQFMKLQRDLAQKERALRQKELDTEILRNMGDRFDPDLQDYALQKIKSNLTFKRDGSYSIVNSKGQERYGMDGNPLNLRSLIDEVAQGNPKLLKQNNLSSGSGLRPGQQSFAGATPDAIPDYSKDPAAFNAWAQKMGLGKRVGLKGAGVTATVSTASRKIV
Ga0255187_10009932	F026558	GGA	MNAKELIHKNPIYNAIYEQMLGYQYAYLGGYIFKTYVRKKRPSEDSNLYLDLVQNTVAQPICRYIVDTINDVLFEPGVKRELIFCTPQGTKINPDNQEWSQLFLLDADLNNRNLDSFMEQVGDLTSIYGHCWVFVDMAQEGDANYGRPYVVSVNPLNVWDWEWEWFGGKPMVKYVKILESEDKDNWYLKCYHLGTEEYPSYWKSYKVGKNVAKGDVEEIGTGTYPAGMAIPGFIVYGRRDPRTIDIGVSDIDAASDAQREHYKLECEAYTSIQFAKTIIRADKGVAIPVHAGSIVRASAGQVECIPVDTGDVDKVTSRQREILEQIEALTGLGGLRNSKNQIASGIAIIEERKTLHRLAKSKARLMEVAEEMIFTFASRFMNVRWAGEVHYNTDYEAHDTNYRLALMGQAKALVQNNPIIDNLIAKEVIGMLAPAEQIPQYEQAYIDTITDAQVKELMTKDNEQINSRDLGDQITTPEQFGETEAVYGDTTEYDSAGDDGAGYDDEGIGTPVTYTGQSYYTNQAIASQLTGINTGR
Ga0255187_10009936	F013523	N/A	VSDTDNTVNAFINRGGLIVKSDDKMLLEALTTYHFEDGSRKRLIKYTEQKYAHIDGLGDCLRYGIHHLFPITHEQTIKEYVGMDPRYMQRPGVKYMPESPLYPGGPTMEEIINGDAQDVDYQIY

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0255187_1000993

Overview

Ecosystem & Geography

Associated Families

Sequences