Scaffold Ga0255176_1011792

Overview

Basic Information

• Taxon OID: 3300024507
• Scaffold ID: Ga0255176_1011792
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepA_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1806
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015339	Metagenome	255	Y
F018175	Metagenome	236	Y
F021538	Metagenome	218	Y
F049636	Metagenome	146	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255176_10117921	F021538	N/A	WVYFLWYYCNMETTIINCDCLCHSLHVRSDVVSKTVDISLWNYGFNDGKLHWKKRLQILVDGFAYSDLVVLNKEELDKLIAALEDARGKIA
Ga0255176_10117922	F018175	N/A	MLVEKLPKNQKEYYHNKIRQYEKLTGKCMNVKGVSKFYDYKIEDAEYNFQAALDLMQKHSCYIYNDSMVEEDPRSNGTHWRKYGFAHVNNKTYIYYFETEEWGKEIDDSFLLSQYQNKSWKAGQLVKTKFPYSIDPGEDYLPYATQNKHIGSDFDSFLKTNNIELKRDINWAVKMLEAGKMMTREGNRSLTLFPKKYDHAESTITTEDLFAEDWMIVQSKTFKEVLDDLYAGKTIRRKSWALDDWGVGKYANGYGKLIYLDLIADDWEVIDVVAEVNKQQEKILKDRNEH
Ga0255176_10117923	F015339	N/A	MNTDIKILDEQYVRGRIWSYIRFQKYLREIAYIFCEEFHYSKDDIIEVSLSSDGKTVWIHYDSGTIGFASEFLWDKDVRETFRKNFEVD
Ga0255176_10117925	F049636	N/A	MTGKEALNKLKEGFTLRRKSWEPDIKCRAYFSDVKEAPEYVPNKPEFEGYISYFDALDNGDFLEDDWEIL