NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255179_1058204

Scaffold Ga0255179_1058204


Overview

Basic Information
Taxon OID3300024504 Open in IMG/M
Scaffold IDGa0255179_1058204 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepA_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)511
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034503Metagenome174Y
F097199Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0255179_10582041F034503N/AKRKQGLAVPQYLVNRALVVSGDIAMACSPCQTTRMEGTGMAQGEGIRGLPNAFMAGDNPRLNQRNESTQ
Ga0255179_10582042F097199N/AMSEALNRVIEEQQKRIDDLLVSNKNLIDRAENIFKKNDELFESVARLIDFRIKTDGWTDKEREHYGSLKHEVRMQMVEAGYCVHCYNWMNFCECDEXDTIL

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