NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255181_1000092

Scaffold Ga0255181_1000092


Overview

Basic Information
Taxon OID3300024502 Open in IMG/M
Scaffold IDGa0255181_1000092 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Colum_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36630
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)52 (81.25%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006545Metagenome / Metatranscriptome370Y
F009328Metagenome / Metatranscriptome319Y
F012200Metagenome / Metatranscriptome282Y
F032263Metagenome / Metatranscriptome180Y
F032942Metagenome / Metatranscriptome178N

Sequences

Protein IDFamilyRBSSequence
Ga0255181_100009212F009328AGGAGMDEGYYCVVCGRYLEANEDRVIVHDDVLHPPEMDFADEEKPQ
Ga0255181_100009219F012200GGAGVSDPIETTRAALGGIKEAIKVGREIKETAREVNTFLDEEAKARVAWKRKQQQMMRRGDMVWMEAIDEYRIIRQIREAEQEMYRQVEREFGRSAVSEVKSLINQLRKDHRELNDEFYRNRMQSRREWGGILLVSAIIYGILKATGAM
Ga0255181_100009221F032942GGAMTTIAARVSTGEIAADSMVSGDDSFYLVEKLRRGKASIYGACGDWDKILKFYHALESGGELDSDLDVTVLELRNDGIWIYEGTIIPARIKNEFWAIGTGANYAIAAMHMGLSPADAVKLACKYDTSSHEPVDVLKLEGRRGRQKNIG
Ga0255181_100009246F006545GGAGMKWEKYDRATTRKMAEYNRAGGGVRKPVRSVAGASTGDKYDRAKFIYRKAAQALSMGHNLKDKNGEATPAALQFKRWAAKVPQNQADLRELKALGERLKTRYKPK
Ga0255181_100009247F032263AGGMKSVWEKPRPKSLGKPEKLSKNQKTAAKRFAKSTGTKYPSLIANMRGAQAKK
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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