Scaffold Ga0255189_1013117

Overview

Basic Information

• Taxon OID: 3300024492
• Scaffold ID: Ga0255189_1013117
• Source Dataset Name: Freshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepC_8h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1134
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Louisiana
• Coordinates
  • Lat. (^o): 29.8571
  • Long. (^o): -89.9778
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012013	Metagenome / Metatranscriptome	284	Y
F050377	Metagenome / Metatranscriptome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255189_10131172	F012013	AGGA	VDKANINEPLDLQEATRRDDVYNQLNEIIDKLEKIPVFPSLMWVWSFDIIREIFENYQMKDLAVNDYVDEAVPEGITLKQIFDKFWEDVDGFGLSMDSGGDIIEEVIRDWMRDNDFLVSLDEDGWLDD
Ga0255189_10131174	F050377	AGGA	MSTPTTTREYLKTQGITVGRRGRFSAAAKNAIQEAVKKGVVFSDSKNAK