NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255185_1029422

Scaffold Ga0255185_1029422


Overview

Basic Information
Taxon OID3300024490 Open in IMG/M
Scaffold IDGa0255185_1029422 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Mississippi River, Louisiana, United States - Miss_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)775
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Louisiana
CoordinatesLat. (o)29.8571Long. (o)-89.9778Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005745Metagenome / Metatranscriptome391Y
F048943Metagenome / Metatranscriptome147Y

Sequences

Protein IDFamilyRBSSequence
Ga0255185_10294222F048943AGGAGGMSVSNYLIEYMKAHLISIEQDQAEIEKQMEDLDMNSKEFLELDFEFNWLGGQAIAARHFIKVGEEYNGTN
Ga0255185_10294223F005745AGGAGMELTKLPEHLQHLVDEGISGLDIIHGELKNLIYEAQLELEEAQRIEEANDYDDALESMERKYWEGQVDALSGLYSLTYDLSFAIMD

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