Scaffold Ga0255223_1003647

Overview

Basic Information

• Taxon OID: 3300024480
• Scaffold ID: Ga0255223_1003647
• Source Dataset Name: Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_0h (Metagenome Metatranscriptome)
• Source Dataset Category: Metatranscriptome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2117
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Oregon
• Coordinates
  • Lat. (^o): 46.1812
  • Long. (^o): -123.1834
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F040592	Metagenome / Metatranscriptome	161	N
F073460	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255223_10036473	F040592	AGGAG	MSNEKSSVMLVVAGFFGSLIAVGKASHGNMRDNLLAISAGTSSAYFLTPVVFEVTGIAASSQTMSAMAFLLGVLGQRGVEIVIGKIFPEAKDAPVD
Ga0255223_10036474	F073460	GGAGG	MLQSINVIANALICLGGLAFYVMLFTKIGDGVKQIDQFGKVSYHVVRTGLAFIVAGALFNVLLLTVPPASEVLMNLGFGLVLSWAAVWHGKKFGVITGVKAIDRKTGTYRVQK