Scaffold Ga0209986_10201131

Overview

Basic Information

• Taxon OID: 3300024433
• Scaffold ID: Ga0209986_10201131
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 994
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014087	Metagenome / Metatranscriptome	266	Y
F047025	Metagenome	150	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209986_102011312	F047025	GAGG	MTWKVKVYLSKDKEDWLYLVDENTLEPKVFDDWTDAQVAAHVWSSSDIEEDSEDKNVHNLSLKGDK
Ga0209986_102011313	F014087	N/A	MDYYEEVLLLRKKVEKYETILKHAMSEKSGAFFICGEAGEKDSMGLPEKIMVCPAYGLDGFASYKKYRDYSDPGW