Scaffold Ga0209986_10080942

Overview

Basic Information

• Taxon OID: 3300024433
• Scaffold ID: Ga0209986_10080942
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1813
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007072	Metagenome	358	Y
F075727	Metagenome	118	Y
F077915	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209986_100809422	F007072	AGGAGG	MELSKISKKGQLSLGDAPTVVLLVGLVFLVMATIAFIGEKYQGSLTTNSVAYNVTGDLQTEIGNNTSIAGIILTISLVGIVLTILIGVFIGVRGGTSRV
Ga0209986_100809424	F077915	GGAGG	MAAATDYYVAPTGNETNGFYELFGYVGRTTGGLFWPVMLLVLWIITFLAMKQYSTSRAWTYASFFCSILAIPLAVLDYIAPRWMYLCIILTLIGFVWLKLEAQ
Ga0209986_100809425	F075727	N/A	FNDSGKLHNNNTIKNIMEQINKKGWVARDFVIAMLLFSGGIALFVLMVGSMANDYDNTNVIDGNFSAKFDKFSEDTERSGEMWSAATSEGGLSLVGTADLLFFSTFRVISLVFSSVVAAGTQMAGFGEFFGIPTAVSGIFMVLMFGILTVSIVFIIISSIRSGREL