Scaffold Ga0209986_10009759

Overview

Basic Information

• Taxon OID: 3300024433
• Scaffold ID: Ga0209986_10009759
• Source Dataset Name: Deep subsurface microbial communities from Black Sea to uncover new lineages of life (NeLLi) - Black_00105 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7340
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 14 (82.35%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Atlantic Ocean: Black Sea
• Coordinates
  • Lat. (^o): 44.288
  • Long. (^o): 34.983
  • Depth (m): 2075

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006282	Metagenome / Metatranscriptome	377	Y
F006306	Metagenome / Metatranscriptome	376	Y
F050391	Metagenome / Metatranscriptome	145	N
F056175	Metagenome / Metatranscriptome	138	N
F085560	Metagenome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209986_1000975913	F006306	AGGA	MSKQKEIGKNWSLYYRNLYEPKIKRLTVRYNELYAENQKMKRRLEKFEGSKRMVLYYNKKGKIT
Ga0209986_1000975914	F050391	AGGAGG	MKLKDSITLTETVEKLNKKNIKLLKQFKAHEEEVIELNEYIDSLEAQIADYKRRFVPDFDMLAKGGESVPISDLKVMSDKAKRSMAKRFLKKYGEEWVRINILENEDLK
Ga0209986_100097592	F056175	AGGA	MENEQLKRIADALEEILRLVKLDLEKTAKRFPEPETDELSKEWKHD
Ga0209986_100097593	F006282	AGGAG	MIEDLKKRVAELAAQNTQLSDHLANMCAQADEDCPAEYRTEHFRSTMDDAYDYLKEIGYL
Ga0209986_100097596	F085560	N/A	MVNTRKTKYTFMYRSRDGHYMRPESFLNINKGRTLSSSQLRALGITKVKLKDARI