Scaffold Ga0209977_10107429

Overview

Basic Information

• Taxon OID: 3300024432
• Scaffold ID: Ga0209977_10107429
• Source Dataset Name: Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1369
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: near North Sumatra
• Coordinates
  • Lat. (^o): 1.759
  • Long. (^o): 96.774
  • Depth (m): 1855

Associated Families

Family	Category	Number of Sequences	3D Structure?
F077194	Metagenome / Metatranscriptome	117	Y
F078600	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209977_101074292	F078600	N/A	MPYNPNNPSNWSWSKAFDEMAKTVHKAEISAQIINHLAGYPGDSHGEYVKLSKEDQDNLYVILSQIL
Ga0209977_101074295	F077194	N/A	MQTLTILDFGSGEVHQYHNVNYDKYEMELDEFVGVYLGYNLNEVEYMFHSDKTVYDLTLELTNGA