Scaffold Ga0209977_10031191

Overview

Basic Information

• Taxon OID: 3300024432
• Scaffold ID: Ga0209977_10031191
• Source Dataset Name: Deep subsurface microbial communities from Indian Ocean to uncover new lineages of life (NeLLi) - Sumatra_00607 metaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2565
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (12.50%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: near North Sumatra
• Coordinates
  • Lat. (^o): 1.759
  • Long. (^o): 96.774
  • Depth (m): 1855

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008424	Metagenome / Metatranscriptome	333	Y
F034895	Metagenome	173	N
F041710	Metagenome	159	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209977_100311912	F034895	N/A	MTTLLERLRPEIVEALEKSRDDYDYSITGLYDKLDSLHLYSQLDMGTIRDLTLWGDVDEMKWDYIDWKYGDKLFSQENIELAL
Ga0209977_100311915	F008424	GGA	MRRIERGLLILVLMGMSFFLGVFYTFYKIDQRTWSETVLKARDIETRYLNYPKKRNYKTEDIERIIYGQK
Ga0209977_100311917	F041710	N/A	MNKLIDEMVFDTQNDRWIFINDLKSGEFKYNDIPVKVFTTDRGWTFYQTTWGNTQISNVSWEKCKETIEYRVENAETIELLEQLSSDSIAEMYENNHNNWTGD