NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209988_10207330

Scaffold Ga0209988_10207330


Overview

Basic Information
Taxon OID3300024431 Open in IMG/M
Scaffold IDGa0209988_10207330 Open in IMG/M
Source Dataset NameDeep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1153
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameKermadec Trench
CoordinatesLat. (o)-32.8507Long. (o)-177.6629Alt. (m)Depth (m)9177
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034209Metagenome / Metatranscriptome175Y

Sequences

Protein IDFamilyRBSSequence
Ga0209988_102073302F034209GGTGGMAINLSELTEHDFDDECPVCRAQDVVHFALLPAASAWETKSELPRFSVALHGAAELLGVILQEGVERQEVDAALSALLDEIEQRNSEDQVMGGPPKGTA

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