Scaffold Ga0209988_10105656

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209988_10105656

Scaffold Ga0209988_10105656

Overview

Basic Information
Taxon OID	3300024431 Open in IMG/M
Scaffold ID	Ga0209988_10105656 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Kermadec Trench to uncover new lineages of life (NeLLi) - N075 metaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1716
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (20.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Kermadec Trench
Coordinates	Lat. (^o)	-32.8507	Long. (^o)	-177.6629	Alt. (m)		Depth (m)	9177
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F020789	Metagenome	222	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209988_101056565	F020789	N/A	MKIIKYYTWFMKSRGKVDTVRGVDEHDSFKSRQWTDKNGNECYNFWDIDAQHPRTAVNCKWRNA

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