Scaffold Ga0196962_10034801

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10034801
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1513
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F017620	Metagenome / Metatranscriptome	239	Y
F019060	Metagenome / Metatranscriptome	232	Y
F020315	Metagenome / Metatranscriptome	224	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_100348012	F020315	AGGAGG	VDEKSLQLLKVMREQLGETTASRTVDAVAAASSLGMYPGTLDRSLLYLVRAGYLEESADHAMTSQGLYLITFQGIAAIDNA
Ga0196962_100348013	F019060	GGAGG	MEEKREGRTKEMAEELSKLQQMHAHLAAVEQMAASYPENHSTRLVIESLELYRARTVVEGEIVALRGSLGYGTTGYGTL
Ga0196962_100348014	F017620	GGAG	VDPTKAAHEAGLDVGDVGSDRYHHALGYLLEEGALVGDEHTETEAGPKQAHGYALYFFTRRAVKLLEG