NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10028161

Scaffold Ga0196962_10028161


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10028161 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1681
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016524Metagenome / Metatranscriptome246Y
F037602Metagenome / Metatranscriptome167N
F042771Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0196962_100281611F016524N/ARSQSTYARVKAQFHNPSGGVIKLEGVTHTRGESGAAHTEVVPTGNVPENAALGTYECRSVEGLTGERKWAPIFEDPAFNIRVVQRPFHAQRGGEFLGLEPA
Ga0196962_100281612F037602GGAGGMAESGGLPSWVEAWVGKVVQVYVHGDSDPLFGVLEDWDRRGVVLRHTEDMVSLTASRVEDVPSEPMMILVTWSAVRYVSVLLEELEEKD
Ga0196962_100281613F042771AGGAMYSQRQEDLDLFSSHLEAKKSGPLVCPICGQTNTILPKGAPIGEPSGEPVIESEPQYAYAACTNCGYSIFFDTDYLPRT
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