Scaffold Ga0196962_10004002

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10004002
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4639
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (90.91%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004321	Metagenome / Metatranscriptome	443	Y
F009317	Metagenome / Metatranscriptome	319	Y
F024493	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_100040024	F004321	GAG	MGVVVGSSARETFSPCELAAAYTEFLERGPQYLDAETGITASAYRSGERVLIAYRESEMDVMVLIHPTP
Ga0196962_100040025	F009317	GGAG	MSPEQVRPGMRVRVMYYHRVEQRRDLVGMVVARYGAEDYMAVDVHLDGGQHRLFWPSDLEEISSPKPWWRLLLGWGSTG
Ga0196962_100040026	F024493	AGGAGG	VHQDQTVVQMAQEALMRQAKALAQRSGHRLEDALRAVVDTQAGRQLRDLAQGEHRHQKAKQWQASVFWERAEKRFMHQIGSEALSRFVAGCSTRG