NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0196962_10003125

Scaffold Ga0196962_10003125


Overview

Basic Information
Taxon OID3300024430 Open in IMG/M
Scaffold IDGa0196962_10003125 Open in IMG/M
Source Dataset NameSoil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5283
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.305Long. (o)-116.2547Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025220Metagenome / Metatranscriptome202Y
F056883Metagenome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0196962_100031252F056883AGGAGGVSDAADAPLFPPEEICAQAQSNAAAWILTMIAYLKERGGAVEDCVAYHGRSFAPAWEGLRGSPVEEVAQLVALNALSAGSTLRSLSSEEGRAELLVEGWPNEELLGFLPLDREECDQIWDTYRPIMEHLGLGYAWQRQNDVVRIVVERQSGL
Ga0196962_100031258F025220AGGAVGLLFGAGGILFALLGASANVSAGAVGAVLGILGYFLGVRRLGAATIVLGVVAVFLMAAASTGLIPGVGPFGHGYD

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