Scaffold Ga0196962_10001713

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10001713
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7287
• Total Scaffold Genes: 14
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (92.86%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007136	Metagenome	357	Y
F036415	Metagenome / Metatranscriptome	170	Y
F051754	Metagenome	143	Y
F054580	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_100017131	F036415	AGGAG	VVEEGVRKENPVSEGRLQKYRAGDEIDMVVHIEHAPMHLREVSARFFSNGQEEGAIISHMDLSGTPSPRSEDQPVQLKGVLHSEVRLSARVAPDGTPGLYRLNRVTVKTYGGREHHYSAEELGEMGFEIVEEPDNRPVVLQIEMGFRTEY
Ga0196962_1000171311	F051754	GGAGG	VSERHIDAEGERRLIEAGFVPEESRLGKRRWKDPDTGRTMPGGAALDRVERREEQELEDEGWERVEAQGTMVFWRRPNTGHLYPRGAAYDVHKRGDKG
Ga0196962_1000171313	F007136	GGAGG	MAVSISARTLDYFGLLVGASVVALLSGVLTALCIKYEQRTLAWFWAASFFGSALVGAYCLWKLL
Ga0196962_100017139	F054580	GGAGG	LAKCAGITQAGAACKGIPIDGSQWCYVHHPDRTEERRRYGLKGGRRGGRGRPSAELARLQRRFEELADAVLSGEIERGVGAVAGQLLNGARACVRDALAAREAEELEARLEQLEEALGHDEGGSRSWGA