Scaffold Ga0196962_10000581

Overview

Basic Information

• Taxon OID: 3300024430
• Scaffold ID: Ga0196962_10000581
• Source Dataset Name: Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14121
• Total Scaffold Genes: 20
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 18 (90.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 33.305
  • Long. (^o): -116.2547
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004746	Metagenome / Metatranscriptome	425	Y
F035469	Metagenome / Metatranscriptome	172	Y
F038469	Metagenome / Metatranscriptome	166	N
F042199	Metagenome	158	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_1000058119	F038469	GGAGG	MVALRCTCEQGTNLWGEFWWIEGEHRWVFFDDERTSETYAEELTHCPGCGRSLERKGLRATPSLLP
Ga0196962_1000058120	F042199	GAG	VDGWVEGCLERIGEDHPEEELLFRDLWDDETQREVVIDCLQADCEVRTGRPPGL
Ga0196962_100005815	F035469	N/A	LGLLLVEQESRDGQDGFWLPFGYYLEREADLLILRRSDDSLVAEFRAEGVDLFEVEFAVWADAD
Ga0196962_100005816	F004746	AGGAGG	LQAYEARRGKVVRVRRGHWKGEFAGMRGTIQERWGNSEHAAVEVLLEDGSSELFWLADLSEVDRHLSV