Scaffold Ga0196962

Basic Information
Taxon OID	3300024430 Open in IMG/M
Scaffold ID	Ga0196962_10000060 Open in IMG/M
Source Dataset Name	Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300024430 Open in IMG/M

Scaffold ID

Ga0196962_10000060 Open in IMG/M

Source Dataset Name

Soil microbial communities from Anza Borrego desert, Southern California, United States - S3+v_20

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	85312
Total Scaffold Genes	82 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	73 (89.02%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

85312

Total Scaffold Genes

82 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

73 (89.02%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (75.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Taxonomy

All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria

(Source: IMG/M)

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Ecosystem

Environmental → Terrestrial → Soil → Sand → Desert → Soil → Systems Level Insights Into Methane Cycling In Arid And Semi-Arid Ecosystems

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.305	Long. (^o)	-116.2547	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: California

Coordinates

Lat. (^o)

33.305

Long. (^o)

-116.2547

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025139	Metagenome	203	Y
F025378	Metagenome / Metatranscriptome	202	Y
F028302	Metagenome / Metatranscriptome	192	Y
F028932	Metagenome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0196962_1000006013	F028302	AGGA	VADVHIYVTSPAEKEGAALEDVEEVLRELDYVSGVEARPEGNVVAVSFEGGKAEQEEITRTVEETGYKVSRLSVRTTFTDEGHLWDI
Ga0196962_1000006014	F028932	N/A	MIWFAWFMLALESLVIAIGLWLMWAMVSEASRERGEAFPPSEDPPAHPPGHPFETGDDSARFTLEEVDERGYVGSRKLHMGCEAAICRTPLGARIIAGRRSLKEPQYAWDYASVRLADKALAYAEFSTHPTDGLIGVEDYERGPYPAAEPGQYLRRWRYTPDGRMERL
Ga0196962_1000006016	F025378	AGGAG	MRRNFGLVVVASALVALLLLALAVARAQDHLPLLALDFTEHLFGIVLAVFVFERMLAWREARQWLAAKDWLYLILLESVDDLLKGLLPATVPREEEGTGERTVVYEVTGERIHVGETVRYSPLRLLVTPGEKDLQSDIFWYATELGPLRYVELAKEALSDARSQIRDTFGSSARLMDAEITTMLISFEQAAMAAIRHLDSAVHLRNEKAEDASYLDGEASTTQRTREADNELAFVSSIIVESVVDSAMKPKAWLEDQRHTREGPSSPFWRLQSSSRAGTGPKQRT
Ga0196962_1000006069	F025139	GAGG	LYRQARLLGALLILQFLAMVGLGVWLTTRVNWDRALDITSGQGQFNFQSVEGPWLKALERSIVFDVYFLVPMILLLLSGLGFVLLRRRGWMLASIAQSLIMLACLFYYGDSRPWFAYPLIAYSILMILLLNSRSVRAAVQSRRAAPVGTRSEVAHGE

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0196962_10000060

Overview

Ecosystem & Geography

Associated Families

Sequences