NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233396_1153174

Scaffold Ga0233396_1153174


Overview

Basic Information
Taxon OID3300024428 Open in IMG/M
Scaffold IDGa0233396_1153174 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 32D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)506
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046006Metagenome152N
F053545Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0233396_11531741F053545N/ACTMCEEVITHMGQRITVHNGYVMLPIEDTRKNIEGGRESKIKWSGETLPEVGKE
Ga0233396_11531743F046006GGAGGVKEYLGPLAKYINLILLLIILHFCITVMVVNFRYIDRLNDTIDTMWHEIEQVKDTNIQL

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