Scaffold Ga0233396_1028406

Overview

Basic Information

• Taxon OID: 3300024428
• Scaffold ID: Ga0233396_1028406
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 32D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1709
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (28.57%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030436	Metagenome	185	N
F056150	Metagenome	138	N
F073424	Metagenome / Metatranscriptome	120	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0233396_10284061	F073424	GAG	MKLTPKEIKEQKAKFGSKAVNYFVRFMDAKRKWRRLPDYFIK
Ga0233396_10284066	F056150	N/A	MDRKLIKKIENFIFWIGREYNVIELEDFKQDIFIILLNKGEDFIIQLDKENSIKKYVYKLCLYQIISERGQYRTKYYLPSQFSSIEDIETYSNSCFKDEVLKDLINSLDGLDKIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKQKWTLNEFYS
Ga0233396_10284067	F030436	N/A	KQTDVFDGNSLNKQLKELTAYLYYIETIRTKAHKDYEKVIHDRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY