NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0233396_1006284

Scaffold Ga0233396_1006284


Overview

Basic Information
Taxon OID3300024428 Open in IMG/M
Scaffold IDGa0233396_1006284 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 32D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4399
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009110Metagenome323N

Sequences

Protein IDFamilyRBSSequence
Ga0233396_10062844F009110AGGMTGSMIASAVRYMESIKDKVPPAYEEAITVKPGTTHLKTLGLDPHKMVKDVNKLKAKGMTIKDACEQVGMTRDQYYKTKKGITNKK

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