NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228650_1056795

Scaffold Ga0228650_1056795


Overview

Basic Information
Taxon OID3300024417 Open in IMG/M
Scaffold IDGa0228650_1056795 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 62D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1118
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027519Metagenome / Metatranscriptome194N
F091241Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0228650_10567951F091241N/AYSIIHKPQAIQTSVASNNEHNSNSEPTTFYGGRETWEGDEIGGADDDLTKYVFKYGTKFYPNAPVELDGRNKTLALQSAISQLGLRNPVCSQPLYGTNNMGTNWDTRDFVLVNSFKTTGDRVENGINTAATSAPIEIDLSFAQATQNKQLITFVEQANTLYIKNDGISSMVKG
Ga0228650_10567952F027519N/AMNYQERSGFEPYDMSWNDDESTPRTDLGDLLNPTGEAYEMPESRSPTPIDTPDEPGDTEDEHDVPHPSQESDLKKDIHHNFSQVSNLASMLEGVESTTESVSQHKYSRLAQSSYDYFNSKGNADLVNTNLKNPKYSHINDLNGFELDKELSTLDDAVLHNKLTGETVISFRGTTSNIKETKAFLKDWEVNS
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