Scaffold Ga0228650_1001581

Overview

Basic Information

• Taxon OID: 3300024417
• Scaffold ID: Ga0228650_1001581
• Source Dataset Name: Seawater microbial communities from Monterey Bay, California, United States - 62D
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 8710
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (60.71%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location

• Location Name: USA: California
• Coordinates
  • Lat. (^o): 36.8313
  • Long. (^o): -121.9047
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008747	Metagenome / Metatranscriptome	328	Y
F032291	Metagenome / Metatranscriptome	180	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0228650_100158115	F032291	AGGA	VTSVGVPLMVPVEESIANPAGRDGEIDQEVTGPPLVVGVTVVIAVPLVSVNELGLYVSEDGATSLTTMVTVTESLPPVLLPVTV
Ga0228650_100158119	F032291	N/A	VESKDKPVGSVGETDHDVIVPPLTVGVVVVIAVSLVNVKVLGLYDKEDGATSLTTMVRVAVSLPPVLSAVTV
Ga0228650_100158121	F008747	AGG	VTAVGVPEIAPVEESIERPAGSDGDTDQEVIVPPLTVGVTVVIAVPFVRVNEFGL
Ga0228650_100158124	F008747	AGG	VTAVGVPLMAPFEESITRPAGSDGEIVQDVGVPPLNVGVTVVIAVPFVRV