Scaffold Ga0255165_1000728

Overview

Basic Information

• Taxon OID: 3300024357
• Scaffold ID: Ga0255165_1000728
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 9821
• Total Scaffold Genes: 19
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (78.95%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000645	Metagenome / Metatranscriptome	962	Y
F005585	Metagenome / Metatranscriptome	395	Y
F005878	Metagenome / Metatranscriptome	387	Y
F085644	Metagenome / Metatranscriptome	111	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255165_100072815	F005585	AGGGGG	MATRGTIFYAFTKSRDNSVFSSETHLTWRLSLSQQNYQEWWKVQSAKIRISISLDMPLSYLSADSVHQKIGTTLSLTRNHNQHQWCDYCKMRWGQMKDGTWHHKAQVPAVWKVQSETPTRRMQVRFYCQPCANEAQNWPDGTFWSLKEQLEAAIDDFAGREQLDVKLS
Ga0255165_100072816	F000645	GGAG	MSNYLDDYVSVQDRLKEFINAYPDYRIKTHVLEESLTPNCDVYIVKTELYRTEADAAAWTTGLSSESKQKQYALELAETGSLGRALNLAGYFAKPNQTPKKPIQTTKPALAEFIKEQRPNDREPIVWDVSAIAEELGAEVIDEIPLCNHGPMILKQGNKDGKEYRGWVCSERNKAAQCPAKWMKIGSDGKWAFQK
Ga0255165_100072817	F005878	GGA	VGVSEVINEMHPFKCGPCKKVTPHHYITKYESEIEPDAWVWLMECQNCFEQRLFDPIDRVISREDEITRCDQCGNYKMKAAKCRICKIADGQERIKERYWNGNATLERFIDADI
Ga0255165_100072819	F085644	N/A	MAKPHSLKYIKQLLEWGFDKEFIARDMGVNLASLEVRLNRAKKREQDGNQGS