NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255169_1031003

Scaffold Ga0255169_1031003


Overview

Basic Information
Taxon OID3300024356 Open in IMG/M
Scaffold IDGa0255169_1031003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)968
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F045704Metagenome152Y
F050326Metagenome145N

Sequences

Protein IDFamilyRBSSequence
Ga0255169_10310031F045704N/AVIVFKAGDFIQLGSYPYKVTTQVLRGSGSTINVTLHRPVIGTPSAGTLTAVGSACTFSVVAEVCPTYTLRPMTNGAFVDWDADFVFRENVQ
Ga0255169_10310032F050326GAGMTALSSASITHGEFVKLTTSTTTYTFCNAAAAITVGGNTFSGLGSLLSVGAVNREIKATSIDMVIGLIGIDPTNISLVLGTNIKGSTVEIWRGFFDSNYQIITSPSTQFFKRYQGIVSNISITEDWNENIRSRTATASISCTSFRAILENRIAGIKTNVKTWQQIYTSDTSMSRVAAISGQYFDFGAAPQTGSQSDPNTVTESQSTVVETGE

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