Scaffold Ga0255169_1000230

Overview

Basic Information

• Taxon OID: 3300024356
• Scaffold ID: Ga0255169_1000230
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Miss_RepC_8d
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27459
• Total Scaffold Genes: 35
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (57.14%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004694	Metagenome / Metatranscriptome	427	Y
F033772	Metagenome / Metatranscriptome	176	Y
F105018	Metagenome / Metatranscriptome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0255169_10002301	F004694	N/A	PMNNVIAISPVSVWTSAGTKSATQFNVRYVNYQNGPAVADCQLLDAAGAEVSSQLVNATAEQTAAWTSDTAFYKVLAQNAGLTPL
Ga0255169_10002303	F105018	N/A	MNASVITSIVRHLLGIASGYLIAKGIELDSGTIETVAGSIGSLLAVGWSLWSKRAEKVS
Ga0255169_10002306	F033772	N/A	MPTYLTLDCVLRSETDPQTIANLERKGWVETPPPSYDPATEQAPVWENCAWVVKPLPPPQPYRVSKDTIVSRVLAAGELNDIIALTNGLPEDQAYLWNNFAWFWNTNPTIVGMCTQLGLDPAVILAPDPYLT