NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255157_1027846

Scaffold Ga0255157_1027846


Overview

Basic Information
Taxon OID3300024355 Open in IMG/M
Scaffold IDGa0255157_1027846 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Atlam_RepB_8h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)967
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033360Metagenome / Metatranscriptome177Y
F087093Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0255157_10278461F087093N/ARFWVAAATVAAIVLKDKIPLSEDQIQQLVWAIGAWIVGESIRPVEPKPEASK
Ga0255157_10278463F033360AGGAMTDAQTKRENWMPWAVAAVCVFLLVRNNQQSSNEKPVKSITATVKETLPTIRLAYRQAFLEAASKIESGEIKDQEAWTKFIEENAGAKRIEAMNKVYEAIDKLDLPASFVGKEKEIADLNRRIG

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