NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255142_1011352

Scaffold Ga0255142_1011352


Overview

Basic Information
Taxon OID3300024352 Open in IMG/M
Scaffold IDGa0255142_1011352 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepB_0h
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1466
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.4271Long. (o)-81.6053Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015073Metagenome / Metatranscriptome257Y
F055557Metagenome / Metatranscriptome138N

Sequences

Protein IDFamilyRBSSequence
Ga0255142_10113521F015073GGAGMGFLDNYETVNQKVKRLHATFPTNRIETSIIDWQPEKGYILIECRIFRHYEDEKPAAIDYAHGMVGAYNAQMKRWYVEDTVSSAFGRCASVLLGTDEKPSRENMEQVEHLPKAFVEEDPWSKPIWEEGFTTAKTAVEEIKSQLGGEIQSESPICAHGHMIFKEGEKNGKQWAGYMCTEKTKANQCSPIWLVLGSDGKWKQRV
Ga0255142_10113523F055557GAGGVKMKISHEDEWTAAKVAIERVEEIEGKPDHVSRYNKNLSFHDYICEIAESVGAEIAVAKYFGIADFNPRASRFKRTADVGSIIEVKWTKYDQGSLIIYDNDRNTDIAILVTGKSPNYVLKGWIPVAIAKNQRWRRRDQPTYWVEQYNLHPIENLRRSSHGEATLPMQG
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