Scaffold Ga0255141_1007600

Overview

Basic Information

• Taxon OID: 3300024351
• Scaffold ID: Ga0255141_1007600
• Source Dataset Name: Freshwater microbial communities from Altamaha River, Georgia, United States - Atl_Cont_RepA_0h
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1726
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Moraxellales → Moraxellaceae → Acinetobacter → unclassified Acinetobacter → Acinetobacter sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → River → Unclassified → Freshwater → Freshwater Microbial Communities Amended With Dissolved Organic Matter (Dom) From Various Rivers In The United States

Source Dataset Sampling Location

• Location Name: USA: Georgia
• Coordinates
  • Lat. (^o): 31.4271
  • Long. (^o): -81.6053
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008081	Metagenome / Metatranscriptome	339	Y
F036704	Metagenome	169	Y
F039044	Metagenome / Metatranscriptome	164	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0255141_10076001	F039044	N/A	NEYQLPVVTNTIIETKTETKVVKPKGIYLGAGINSLLQPSGKVAYLDNKYLFEYQYSPMQRLHQVGVSKKLF
Ga0255141_10076002	F036704	N/A	MWIEIEVILTGTTFDWKELGLEVKHECTRRMVRIKDIAYVQELMHDIQIVYFYDQTSCLIKGKYQQIRDEILHLDDPEYD
Ga0255141_10076004	F008081	N/A	MEELKVLNPFGYGEAHRVLDENRKTPEYWWEYLGLHDLFVENEFYLLFSDGLLVKKGRSKFRTSQYIKGEKFYSFKKFYETIFFESI