NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0244776_10504844

Scaffold Ga0244776_10504844


Overview

Basic Information
Taxon OID3300024348 Open in IMG/M
Scaffold IDGa0244776_10504844 Open in IMG/M
Source Dataset Name0.2um to 3um size fraction coassembly
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)780
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location
Location NameColumbia River Estuary, USA
CoordinatesLat. (o)46.234Long. (o)-123.9135Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F054031Metagenome / Metatranscriptome140Y
F071229Metagenome / Metatranscriptome122Y
F093858Metagenome / Metatranscriptome106Y

Sequences

Protein IDFamilyRBSSequence
Ga0244776_105048442F093858GGAGGMIDLHDPSAVCRSLGYFLDFLVMFVPVLSLAILARRIAR
Ga0244776_105048443F054031GGAGGMSAADWDAILANRDKAEALPECDWTTETPETEAAVKASGSTFGIPLRETSRRLERQRNGLYQLLNRRAGQ
Ga0244776_105048444F071229GGAGGMSDTTGIISACLIMLSLYTTFQLGIECERERIRRERRRRFEEDNNDSANHDDFD

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